diff options
| -rw-r--r-- | .SRCINFO | 16 | ||||
| -rw-r--r-- | PKGBUILD | 28 |
2 files changed, 24 insertions, 20 deletions
@@ -1,14 +1,15 @@ pkgbase = r-decoupler - pkgdesc = decoupleR: Inferring biological activities from omics data using a collection of methods - pkgver = 2.8.0 + pkgdesc = Ensemble of computational methods to infer biological activities from omics data + pkgver = 2.9.7 pkgrel = 1 url = https://bioconductor.org/packages/decoupleR arch = any - license = GPL - depends = r + license = GPL-3.0-only + depends = r-biocparallel depends = r-broom depends = r-dplyr depends = r-magrittr + depends = r-parallelly depends = r-purrr depends = r-rlang depends = r-stringr @@ -25,6 +26,7 @@ pkgbase = r-decoupler optdepends = r-glmnet optdepends = r-gsva optdepends = r-knitr + optdepends = r-magick optdepends = r-omnipathr optdepends = r-patchwork optdepends = r-pheatmap @@ -33,13 +35,13 @@ pkgbase = r-decoupler optdepends = r-refmanager optdepends = r-rmarkdown optdepends = r-roxygen2 - optdepends = r-rpart optdepends = r-sessioninfo optdepends = r-seurat optdepends = r-summarizedexperiment optdepends = r-testthat optdepends = r-viper - source = https://bioconductor.org/packages/release/bioc/src/contrib/decoupleR_2.8.0.tar.gz - sha256sums = 09b6d3398eec6e5aa6eacd41c8d025488e6acc771e04e43040cb8ea1feccd4ee + source = https://bioconductor.org/packages/release/bioc/src/contrib/decoupleR_2.9.7.tar.gz + md5sums = 952a2cef0e24d37af44d2cd09eb9597d + b2sums = 3fbd3789d992bb542df74e78217e58ca5c1ae71c44e5e5fd79615ccb481e7b8c68ab5e39e187d5c1e6dd20f63cd5880bd656cf1128d88e78d4877d32cbb50d3e pkgname = r-decoupler @@ -1,19 +1,20 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=decoupleR -_pkgver=2.8.0 +_pkgver=2.9.7 pkgname=r-${_pkgname,,} -pkgver=2.8.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='decoupleR: Inferring biological activities from omics data using a collection of methods' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +pkgdesc="Ensemble of computational methods to infer biological activities from omics data" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" +license=('GPL-3.0-only') depends=( - r + r-biocparallel r-broom r-dplyr r-magrittr + r-parallelly r-purrr r-rlang r-stringr @@ -32,6 +33,7 @@ optdepends=( r-glmnet r-gsva r-knitr + r-magick r-omnipathr r-patchwork r-pheatmap @@ -40,7 +42,6 @@ optdepends=( r-refmanager r-rmarkdown r-roxygen2 - r-rpart r-sessioninfo r-seurat r-summarizedexperiment @@ -48,14 +49,15 @@ optdepends=( r-viper ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('09b6d3398eec6e5aa6eacd41c8d025488e6acc771e04e43040cb8ea1feccd4ee') +md5sums=('952a2cef0e24d37af44d2cd09eb9597d') +b2sums=('3fbd3789d992bb542df74e78217e58ca5c1ae71c44e5e5fd79615ccb481e7b8c68ab5e39e187d5c1e6dd20f63cd5880bd656cf1128d88e78d4877d32cbb50d3e') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |