diff options
| -rw-r--r-- | .SRCINFO | 9 | ||||
| -rw-r--r-- | PKGBUILD | 27 |
2 files changed, 20 insertions, 16 deletions
@@ -1,11 +1,10 @@ pkgbase = r-proactiv pkgdesc = Estimate Promoter Activity from RNA-Seq data - pkgver = 1.12.0 + pkgver = 1.14.0 pkgrel = 1 url = https://bioconductor.org/packages/proActiv arch = any license = MIT - depends = r depends = r-annotationdbi depends = r-biocparallel depends = r-data.table @@ -23,12 +22,14 @@ pkgbase = r-proactiv depends = r-scales depends = r-summarizedexperiment depends = r-tibble + depends = r-txdbmaker optdepends = r-gridextra optdepends = r-knitr optdepends = r-rmarkdown optdepends = r-rtsne optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/proActiv_1.12.0.tar.gz - sha256sums = 12727aa216c2884a461a63222e9503bec5930536e0cddc836c3966f6604a9501 + source = https://bioconductor.org/packages/release/bioc/src/contrib/proActiv_1.14.0.tar.gz + md5sums = b41f3047e8eea9f19a7829524e190786 + b2sums = 7d0cef54045b3686fb4a0bca705fba52f2553b7a6704b7f26924c95b3dd5547d414ed5737d52b800a3dba08d8c16e1ea5314a7c1ccff4804c04f4e233e7986e5 pkgname = r-proactiv @@ -1,16 +1,15 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=proActiv -_pkgver=1.12.0 +_pkgver=1.14.0 pkgname=r-${_pkgname,,} -pkgver=1.12.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Estimate Promoter Activity from RNA-Seq data' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" +pkgdesc="Estimate Promoter Activity from RNA-Seq data" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" license=('MIT') depends=( - r r-annotationdbi r-biocparallel r-data.table @@ -28,6 +27,7 @@ depends=( r-scales r-summarizedexperiment r-tibble + r-txdbmaker ) optdepends=( r-gridextra @@ -37,15 +37,18 @@ optdepends=( r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('12727aa216c2884a461a63222e9503bec5930536e0cddc836c3966f6604a9501') +md5sums=('b41f3047e8eea9f19a7829524e190786') +b2sums=('7d0cef54045b3686fb4a0bca705fba52f2553b7a6704b7f26924c95b3dd5547d414ed5737d52b800a3dba08d8c16e1ea5314a7c1ccff4804c04f4e233e7986e5') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |