diff options
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 32 |
2 files changed, 20 insertions, 26 deletions
@@ -1,11 +1,11 @@ pkgbase = r-reactomegsa pkgdesc = Client for the Reactome Analysis Service for comparative multi-omics gene set analysis - pkgver = 1.16.1 + pkgver = 1.18.0 pkgrel = 1 url = https://bioconductor.org/packages/ReactomeGSA arch = any license = MIT - depends = r + depends = r-biobase depends = r-dplyr depends = r-ggplot2 depends = r-gplots @@ -14,17 +14,13 @@ pkgbase = r-reactomegsa depends = r-progress depends = r-rcolorbrewer depends = r-tidyr - optdepends = r-biobase optdepends = r-devtools - optdepends = r-edger optdepends = r-knitr - optdepends = r-limma optdepends = r-reactomegsa.data optdepends = r-rmarkdown - optdepends = r-scater - optdepends = r-seurat optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/ReactomeGSA_1.16.1.tar.gz - sha256sums = faa9aad8c282a09909833ddcc261f502f1f786869e3425626771160881b9e35c + source = https://bioconductor.org/packages/release/bioc/src/contrib/ReactomeGSA_1.18.0.tar.gz + md5sums = d26ef99a4e66f2bd8260f740756ff143 + b2sums = a8538e564bd3b83ed1aa968f8937a6797815474a76054978bec800e4fa1b2d3cc1ec933fdfb03062256deb9ed4e82a83430e05550e9262487234fbb02b566c70 pkgname = r-reactomegsa @@ -1,16 +1,16 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=ReactomeGSA -_pkgver=1.16.1 +_pkgver=1.18.0 pkgname=r-${_pkgname,,} -pkgver=1.16.1 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Client for the Reactome Analysis Service for comparative multi-omics gene set analysis' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" +pkgdesc="Client for the Reactome Analysis Service for comparative multi-omics gene set analysis" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" license=('MIT') depends=( - r + r-biobase r-dplyr r-ggplot2 r-gplots @@ -21,27 +21,25 @@ depends=( r-tidyr ) optdepends=( - r-biobase r-devtools - r-edger r-knitr - r-limma r-reactomegsa.data r-rmarkdown - r-scater - r-seurat r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('faa9aad8c282a09909833ddcc261f502f1f786869e3425626771160881b9e35c') +md5sums=('d26ef99a4e66f2bd8260f740756ff143') +b2sums=('a8538e564bd3b83ed1aa968f8937a6797815474a76054978bec800e4fa1b2d3cc1ec933fdfb03062256deb9ed4e82a83430e05550e9262487234fbb02b566c70') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |