diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5ff846dd253c --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,38 @@ +# Maintainer: Bipin Kumar <kbipinkumar@pm.me> + +pkgname=allelecount +_pkgname=alleleCount +pkgver=4.3.0 +pkgrel=1 +pkgdesc="program for estimating the NGS copy number" +arch=('x86_64') +url="http://cancerit.github.io/alleleCount/" +license=('AGPL3') +depends=('glibc' 'htslib' 'bzip2' 'xz' 'zlib') +makedepends=('quilt' 'perl') +source=("${pkgname}-${pkgver}.tar.gz::https://github.com/cancerit/alleleCount/archive/refs/tags/v${pkgver}.tar.gz" + 'series' + 'harden.patch') +b2sums=('f0f2077d0efed1a9f4db76648ae375ea30989909d255917b5b280e32187a27aaf1e1844bccae8b659c34081d34592d3782b7d6df926ece79dcea62cb966b4539' + '55807c3d06f035d18040248d272bb150bc84ef44c4e01ae984f3abe27fd34d6f18abe5bc1cbb2945435725d2344a5b5209b37ac322cc1ff5fae1612c265c1b9b' + '9de3b1c44db6e8b0e2321450d19d741ad233eabb00d32c6f951e78177ee1bd36d150c3685eb7c373f806c694d3c84b94e7e4fd5683387f85587de35a646c7066') + +prepare(){ + mkdir -p ${_pkgname}-${pkgver}/patches + cp *.patch ${_pkgname}-${pkgver}/patches + cp series ${_pkgname}-${pkgver}/patches + # Apply Patches + cd ${_pkgname}-${pkgver}/patches + quilt push -a +} + +build() { + cd ${_pkgname}-${pkgver}/c + export HTSLIB=/usr/lib + make prefix=/usr +} + +package() { + cd ${_pkgname}-${pkgver}/c/bin + install -Dm755 alleleCounter ${pkgdir}/usr/bin/alleleCounter +} |