diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 18 |
1 files changed, 12 insertions, 6 deletions
@@ -2,13 +2,12 @@ pkgname=dnaa pkgver=0.1.2 -pkgrel=3 +pkgrel=4 pkgdesc='An analysis package for short reads from next-generation sequencing' arch=('i686' 'x86_64') -url="http://sourceforge.net/apps/mediawiki/dnaa/index.php?title=Main_Page" +url="https://sourceforge.net/projects/dnaa/" license=('GPL2') depends=('zlib' 'bzip2' 'r' 'perl') -makedepends=('gawk') conflicts=('dwgsim') # Upstream doesn't provide a way to use already-installed bfast or samtools... @@ -16,8 +15,13 @@ source=( "http://downloads.sourceforge.net/project/bfast/bfast/0.7.0/bfast-0.7.0a.tar.gz" "http://downloads.sourceforge.net/project/samtools/samtools/0.1.18/samtools-0.1.18.tar.bz2" "http://downloads.sourceforge.net/project/${pkgname}/${pkgname}/${pkgver}/${pkgname}-${pkgver}.tar.gz" +"ToUpper_build_fix.patch" # fix compile error ) +prepare() { + patch -p1 < ToUpper_build_fix.patch +} + build() { cd ${pkgname}-${pkgver} [[ ! -L bfast ]] && ln -s ../bfast-0.7.0a bfast @@ -30,6 +34,8 @@ package() { cd ${pkgname}-${pkgver} make DESTDIR=${pkgdir} install } -md5sums=('9b0574dce903ab83e39e371b0a3bbbc6' - '71dab132e21c0766f0de84c2371a9157' - 'a11eb449af9bf14906d00fdba5150ead') + +sha256sums=('ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e' + 'f3faaf34430d4782956562eb72906289e8e34d44d0c4d73837bdbeead7746b16' + 'e6549590066de19e7c5989404830fa3ea82607b864a25147ca16b20a28dd6b68' + '7efc85235c49789b208b7b0b879241b608cccd16ec949fc2d7ad09800ea3ff8c') |