diff options
Diffstat (limited to 'PKGBUILD')
| -rwxr-xr-x | PKGBUILD | 14 |
1 files changed, 12 insertions, 2 deletions
@@ -7,12 +7,12 @@ pkgdesc="A comprehensive library of analysis tools for FMRI, MRI and DTI brain i arch=("i686" "x86_64") url="http://www.fmrib.ox.ac.uk/fsl/" license=(custom) -depends=(gd libxml2 libxml++2.6 gsl libpng nlopt newmat tcl tk zlib python glu boost-libs vtk6) +depends=(gd libxml2 libxml++2.6 gsl libpng nlopt newmat tcl tk zlib python glu boost-libs vtk6 sqlite) makedepends=() optdepends=(cuda) sha1sums=('34a4a3a0c3bc9e6fbf9a9745636c7b3b4479ecdf' '35108d2da18a6dfe1f9f6f6ff81b1a0836235c3c' - '8c4badea905d49b10a937f9fd64ba1e7df384f25' + '679c65c90e79b7f748ad1c2d4b5abeebebf05dfd' 'f7841c51fb221a74017400e4daef7de640679887' '2df550b126a6ec6022a164a18dddffe4e59962f9') @@ -37,6 +37,13 @@ prepare() { cp "${srcdir}/externallibs.mk" "${FSLDIR}/config/${FSLMACHTYPE}/" fi + # Copy makepkg build flags into configuration + sed -i '0,/${AccumulatedIncFlags}/{s^${AccumulatedIncFlags}^& '"${CFLAGS}"'^}' "${srcdir}/fsl/config/common/vars.mk" + sed -i '0,/${AccumulatedIncFlags}/{s^${AccumulatedIncFlags}^& '"${CPPFLAGS}"'^}' "${srcdir}/fsl/config/common/vars.mk" + sed -i '1,/${AccumulatedIncFlags}/!{s^${AccumulatedIncFlags}^& '"${CXXFLAGS}"'^}' "${srcdir}/fsl/config/common/vars.mk" + sed -i '1,/${AccumulatedIncFlags}/!{s^${AccumulatedIncFlags}^& '"${CPPFLAGS}"'^}' "${srcdir}/fsl/config/common/vars.mk" + sed -i 's^LDFLAGS = .*$^& '"${LDFLAGS}"'^g' "${srcdir}/fsl/config/common/vars.mk" + # Fix 32-bit if test "$CARCH" == i686; then sed -i "s^-m64^^g" "${FSLDIR}/config/${FSLMACHTYPE}/systemvars.mk" @@ -63,6 +70,9 @@ prepare() { sed -i 's/ fftw"/"/g' "${FSLDIR}/extras/build" sed -i 's/"tcl tk"/""/g' "${FSLDIR}/extras/build" + # Link mist-clean against system sqlite + sed -i 's^${SQLITE_LIB}/libsqlite3.a^-lsqlite3^g' "${srcdir}/fsl/src/mist-clean/Makefile" + # Fix Melodic use of ifstream sed -i 's^if(in>0)^if(!!in)^g' "${FSLDIR}/src/melodic/meldata.cc" |