diff options
Diffstat (limited to 'PKGBUILD')
| -rwxr-xr-x | PKGBUILD | 50 |
1 files changed, 26 insertions, 24 deletions
@@ -2,51 +2,53 @@ # Contributor: fishburn <frankthefishburn@gmail.com> pkgname=fsl -pkgver=6.0.1 -pkgrel=2 +pkgver=6.0.2 +pkgrel=1 pkgdesc="A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data" arch=("x86_64") url="http://www.fmrib.ox.ac.uk/fsl/" license=(custom) -depends=(gd libxml2 libxml++2.6 gsl libpng nlopt newmat tcl tk zlib python glu boost-libs vtk sqlite python3 fslpy bc) +depends=(gd libxml2 libxml++2.6 gsl libpng nlopt newmat tcl tk zlib python glu boost-libs vtk sqlite python3 fslpy bc openblas) makedepends=(boost fftw) optdepends=(cuda) source=("http://www.fmrib.ox.ac.uk/fsldownloads/fsl-${pkgver}-sources.tar.gz" "http://www.fmrib.ox.ac.uk/fsldownloads/fsl-${pkgver}-feeds.tar.gz" - "externallibs.mk" - "systemvars.mk" + "buildSettings.mk" "imcp" - "imglob" - "immv" - "001-use_distribution_environment.patch" - "002-fix_meldata_usage_of_ifstream.patch" - "003-fix_fsl_exec_empty_errorCode.patch") + "imglob" + "immv" + "001-use_distribution_environment.patch" + "002-fix_meldata_usage_of_ifstream.patch" + "003-fix_fsl_exec_empty_errorCode.patch" + "004-fix_missing_LIB_PROB.patch") -sha256sums=('ccab9709239340299b0ca034cb00d6ce0170b9e0d075b3adb55c556feacfb2da' - '91aa756d5a052702cc68e41bcc9a64ba7c7f8853feb215d5a44eeb710c4a0fd0' - 'e3345af9d3a1bca157c3a5700c63c4d0e01da3cec525f8ffb8f1a04b048aeff1' - '326c73cf0fb07ef9436ec31dda00f1e77488949152aa908b50aa4059701b2984' +sha256sums=('c118b351c6cedb441af7e1b9d194cf344505ff53b417063f697b86305a908afd' + '53c885e01881d50ff8db230c849f98fcb9ca5139c5215cfca4f901e5cad66eee' + 'e73d3b7289981c95581d9378c2a39694bc0fcdf7170c5defc864a47871e98df1' 'c61f185fbe7e297c4518e96377aa5ff4852f90eda0dbb9ae8edc5e24735e14ad' - '7a1039cdc38b4d728f14efce3b0fda0cadc7bfcd3432556c3f3113985bf2720a' - 'b6f61a6d5672b6684f19150f6e21ded1bd04ec6415dcf07a32291e4002bfa5d8' - 'b59921d9b76c07da6c775d63d5fe99ca5069a15827aa7a3d44c2e5eb6f3638d6' - '13d4cf35343e7a73bc2534c94b1b0d4db41c338d374e6982091e4cf7a421d420' - '64b4ccefa63a3cf920b185dd52e94b918c24f2cedaebcec8efb767bd80a6418a') + '7a1039cdc38b4d728f14efce3b0fda0cadc7bfcd3432556c3f3113985bf2720a' + 'b6f61a6d5672b6684f19150f6e21ded1bd04ec6415dcf07a32291e4002bfa5d8' + '8c85234f03d3cd226f84fd1aa446e46a8f00c2c6ae3cc7fefedc1e48ffc61daa' + '13d4cf35343e7a73bc2534c94b1b0d4db41c338d374e6982091e4cf7a421d420' + '64b4ccefa63a3cf920b185dd52e94b918c24f2cedaebcec8efb767bd80a6418a' + 'adea0372f42026e72e385f1bec19ecc8cffa46de1f617271f14c9345c6b83c04') prepare() { cd "${srcdir}" export FSLDIR="${srcdir}/fsl" . "${FSLDIR}/etc/fslconf/fsl.sh" export FSLMACHTYPE=$(${FSLDIR}/etc/fslconf/fslmachtype.sh) + # We only create this dir to keep 'build' from complaining mkdir "${FSLDIR}/config/${FSLMACHTYPE}" - # Use config linux_64-gcc4.8 as template - cp "${srcdir}"/{externallibs.mk,systemvars.mk} "${FSLDIR}/config/${FSLMACHTYPE}" + cp "${srcdir}"/buildSettings.mk "${FSLDIR}"/config/ # Apply patches - patch -Np1 -i "${srcdir}/001-use_distribution_environment.patch" - patch -Np1 -i "${srcdir}/002-fix_meldata_usage_of_ifstream.patch" + patch -Np1 -i "${srcdir}"/001-use_distribution_environment.patch + patch -Np1 -i "${srcdir}"/002-fix_meldata_usage_of_ifstream.patch # From https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;e8fa48c1.1501 - patch -Np1 -i "${srcdir}/003-fix_fsl_exec_empty_errorCode.patch" + patch -Np1 -i "${srcdir}"/003-fix_fsl_exec_empty_errorCode.patch + # I'm not sure why -L${LIB_PROB} is missing in some Makefiles + patch -Np1 -i "${srcdir}"/004-fix_missing_LIB_PROB.patch # Insert makepkg build flags into configuration sed -i '0,/${AccumulatedIncFlags}/{s^${AccumulatedIncFlags}^& '"${CFLAGS}"'^}' "${srcdir}/fsl/config/common/vars.mk" |