1 files changed, 59 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..958559604596
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,59 @@
+# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
+
+pkgname=kinwalker
+pkgver=2.0
+pkgrel=1
+pkgdesc="Compute cotranscriptional folding trajectories of RNAs"
+arch=('x86_64' 'i686')
+license=('Custom')
+url="http://www.bioinf.uni-leipzig.de/Software/Kinwalker/"
+depends=('viennarna')
+optdepends=()
+makedepends=()
+provides=()
+source=(http://www.bioinf.uni-leipzig.de/Software/Kinwalker/kinwalker.tar.gz
+        0001-corrected-Makefile-in-order-to-work-with-ViennaRNA-2.patch
+        0002-remove-redefinition-of-INF-energies.patch
+        0003-remove-unnecessary-and-deprecated-wrong-declarations.patch
+        0004-make-kinwalker-comply-to-stricter-g.patch
+        0005-remove-all-the-remaining-unnecessary-stuff.patch
+        0006-fix-bug-for-co-transcriptional-folding-with-dangles-.patch
+        0007-Do-not-fail-on-using-B-heuristic.patch
+        0008-Removed-findpath.h-and-cleaned-up-remnants-of-false-.patch
+)
+md5sums=( '7723b173de294ef96b86d94f4f6cbeb9'
+          '2f92e91e58badff10d4fe697bca3abf0'
+          'dba93e6fce292b6e9b9e7e0b667e6e6c'
+          '9ae628a2c89ac2654813b87a54605966'
+          '73489a3b0f68a5bbfd158b5ea06f422a'
+          '39bd8b46857edd134671c30260dcc93c'
+          'a6bab92d415092d4e47e08564ae9c48e'
+          '285cfd82e05b9e0c69d0196089d82e3b'
+          '4afda6634ea89393975b953ca7788497'
+          )
+
+prepare() {
+  cd "${srcdir}/kinwalker"
+
+  patch -p1 < ../0001-corrected-Makefile-in-order-to-work-with-ViennaRNA-2.patch
+  patch -p1 < ../0002-remove-redefinition-of-INF-energies.patch
+  patch -p1 < ../0003-remove-unnecessary-and-deprecated-wrong-declarations.patch
+  patch -p1 < ../0004-make-kinwalker-comply-to-stricter-g.patch
+  patch -p1 < ../0005-remove-all-the-remaining-unnecessary-stuff.patch
+  patch -p1 < ../0006-fix-bug-for-co-transcriptional-folding-with-dangles-.patch
+  patch -p1 < ../0007-Do-not-fail-on-using-B-heuristic.patch
+  patch -p1 < ../0008-Removed-findpath.h-and-cleaned-up-remnants-of-false-.patch
+}
+
+build() {
+  cd "${srcdir}/kinwalker"
+  make || return 1
+}
+
+package() {
+  cd "${srcdir}/kinwalker"
+
+  install -Dm755 kinwalker "${pkgdir}/usr/bin/kinwalker"
+  install -Dm644 man/kinwalker.1 "${pkgdir}/usr/share/man/man1/kinwalker.1"
+}
+