diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 27 |
1 files changed, 13 insertions, 14 deletions
@@ -5,28 +5,27 @@ pkgname=python-biopython _pkgname=biopython -pkgver=1.84 -pkgrel=5 +pkgver=1.85 +pkgrel=1 pkgdesc="Freely available Python tools for computational molecular biology" arch=('x86_64') url="http://www.biopython.org" -license=('custom') +license=('LicenseRef-Biopython License') makedepends=('python-setuptools') checkdepends=('python-scipy' 'python-rdflib' 'python-igraph' 'python-reportlab' 'python-networkx' 'python-mmtf' 'python-matplotlib' 'python-coverage') -depends=('python-numpy') -optdepends=('python-mysql-connector: for BioSQL module') +depends=('python-numpy' 'glibc' 'python' 'python-scipy' 'python-pillow') +# optdepends from https://github.com/biopython/biopython?tab=readme-ov-file#optional-dependencies +optdepends=('python-mysql-connector: for BioSQL module' + 'python-reportlab: for graph generation' + 'python-networkx: for certain niche functions in Bio.Phylo module' + 'python-matplotlib: to plot phylogenetic trees.' + 'python-rdflib: CDAO parser under Bio.Phylo module' + ) source=("http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz" - "compat.patch::https://patch-diff.githubusercontent.com/raw/biopython/biopython/pull/4706.patch") -sha512sums=('cadf82959626b2b9f4482757d95d7c4db262d3e1e4a007567a2ed7f1f4114a0d6543886a4971dffbe0ff43579aa7e0c3b7132d8b5e58022e8ddf0b13dbf07f52' - '8bd596602458a07857f4bbaf27dab71c6fc563417c68cefb98de2cbb9607eca5748546ae34c94e84a9f2620f31d6a93ffb80e7477c97fc324e01fdbd005f9352') + ) +sha512sums=('a9bff4fdf34f71f74f35a9bbf25887d6fcf84622d77854e11b0da418b6ff88c7d6e49474d82ca2e4da782ea07cc28f03b43b219b798a806ab02e11af21cd9dab') options=(!debug) -prepare() { - cd "${srcdir}/${_pkgname}-${pkgver}" - # python 3.13 compability patch until biopython 1.85 is released - patch -p1 < $srcdir/compat.patch -} - build() { cd "${srcdir}/${_pkgname}-${pkgver}" python setup.py build |