1 files changed, 48 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..516f6cb42d95
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ArrayExpressHTS
+_pkgver=1.46.0
+pkgname=r-${_pkgname,,}
+pkgver=1.46.0
+pkgrel=1
+pkgdesc='ArrayExpress High Throughput Sequencing Processing Pipeline'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-biocgenerics
+  r-biomart
+  r-biostrings
+  r-bitops
+  r-edger
+  r-genomicranges
+  r-hmisc
+  r-iranges
+  r-r2html
+  r-rcolorbrewer
+  r-rhtslib
+  r-rjava
+  r-rsamtools
+  r-sampling
+  r-sendmailr
+  r-shortread
+  r-snow
+  r-svmisc
+  r-xml
+  make
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('c8e08db7779a56a72a6dee7c437f6dae5d3579bd0ab690bd565ff48c9bc28faf')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: