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Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..3b550b68254f --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,47 @@ +# Maintainer: bipin kumar <kbipinkumar@pm.me> +# Contributor: Fabio Heday <fheday@gmail.com> + +pkgname=trnascan-se +pkgver=2.0.12 +pkgrel=2 +pkgdesc="Program for improved detection of transfer RNA (tRNA) genes in genomic sequence." +arch=('i686' 'x86_64') +url="http://lowelab.ucsc.edu/tRNAscan-SE/" +license=(GPL3) +depends=('infernal' 'perl' 'glibc') +backup=('etc/tRNAscan-SE.conf') +source=("https://github.com/UCSC-LoweLab/tRNAscan-SE/archive/refs/tags/v${pkgver}.tar.gz" + 'euk.patch' + 'Makefile.patch' + 'tRNAscan-SE.conf.src.patch' + 'tRNAscan-SE.src.patch') + +sha512sums=('808ba99c5d492b77a32f64c16c3400c2094cfb882fee03bbbd77d3cccb26f2184ff7e1872edccee854918019571a88c9b9e0b95f9738294ba18979d49ecef4d1' + 'db98b453090d3870e5f20941bad3f4462d31a77c293df959f4da242356b7a87684f1941e534a807e9ac5c1df28d493ae565d507bc21c0dd0bbfda42d7ef407e8' + 'a938790ec87967b3fd4688d19d9be08a55ac0f485ca5b8d2c2b641e745a85b0917ad70d9d2d6c301b0426ecf621c2e655b8c38b51fe6c603af79ebc4e978ca0c' + 'd8f956c4c8796c069e17b6fc3087ab6b6bf4a1b9ed381032e580e0296679aeb7947151ce08f97d3e92771e36521dbfb716b575fc60ca02f21dcae76435f2bc63' + '3aa37cf95d18d9ac5d9a641abeb18283e82f3c9f64b1734c8bf6f3cc8ac6e9e1e7545c417292ad459c9b385e7d5e03236198e328f6191113d43b3eda2a58f9b6') + +prepare() { + chmod -R o+xr tRNAscan-SE-${pkgver}/lib/tRNAscanSE/ + cp -r *.patch tRNAscan-SE-${pkgver}/ + cd tRNAscan-SE-${pkgver}/ + # Patches for using Directory structure as recommended in Archwiki + patch -p1 < Makefile.patch + patch -p1 < tRNAscan-SE.conf.src.patch + patch -p1 < tRNAscan-SE.src.patch + patch -p1 < euk.patch + autoreconf -i + automake +} + +build() { + cd tRNAscan-SE-${pkgver}/ + ./configure --prefix=/usr --sysconfdir=/etc --datadir=/usr/share/ --includedir=/usr/include/${pkgname} + make +} + +package() { + cd tRNAscan-SE-${pkgver} + make DESTDIR=${pkgdir}/ install +} |