diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 40 |
1 files changed, 23 insertions, 17 deletions
@@ -1,33 +1,41 @@ # Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at> pkgbase=viennarna -pkgname=('viennarna' 'python-rna' 'python2-rna' 'perl-rna') -pkgver=2.4.13 -pkgrel=1 +pkgname=('viennarna' 'python-rna' 'perl-rna') +pkgver=2.6.4 +pkgrel=2 pkgdesc="RNA Secondary Structure Prediction and Comparison" arch=('x86_64' 'i686') license=('Custom') url="http://www.tbi.univie.ac.at/RNA" groups=('viennarna-package') makedepends=( 'perl' - 'python2' 'python' 'libtool' 'check' 'mpfr' - 'gsl') + 'gsl' + 'lapack' + 'lapacke' + 'blas' + 'gcc-fortran') + source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz) options=('staticlibs' '!strip') -sha256sums=('915c271b48536a3cc60b3109f11f7fd99dcd26d22621ee50f05e7f1c2f90cabe') +sha256sums=('d1259ce5809601a12b0dc9b724ea2c55806fece80d8d83ad417ea8a2dd574982') -build() { +prepare() { cd "${srcdir}/ViennaRNA-${pkgver}" ./configure \ --with-cluster \ --with-kinwalker \ --prefix=/usr \ INSTALLDIRS=vendor +} + +build() { + cd "${srcdir}/ViennaRNA-${pkgver}" make } @@ -40,11 +48,14 @@ check() { package_viennarna() { depends=('perl' 'mpfr' - 'gsl') + 'gsl' + 'lapack' + 'blas') optdepends=('gri: create 2D plots of secondary structure landscape with RNA2Dfold') - provides=('Kinfold=1.3' + provides=('Kinfold=1.4' 'RNAforester=2.0' 'kinwalker=2.0' + 'RNAxplorer=0.9' "viennarna2=${pkgver}" "libRNA=${pkgver}") conflict=('kinwalker') @@ -67,6 +78,8 @@ package_viennarna() { make DESTDIR="${pkgdir}" install cd ../RNAlocmin make DESTDIR="${pkgdir}" install + cd ../RNAxplorer + make DESTDIR="${pkgdir}" install cd ../.. # install library and header files @@ -100,17 +113,10 @@ package_viennarna() { rm $pkgdir/usr/share/info/dir } -package_python2-rna() { - depends=('python2' viennarna="${pkgver}") - cd "${srcdir}/ViennaRNA-${pkgver}" - cd interfaces/Python - make DESTDIR="${pkgdir}" install -} - package_python-rna() { depends=('python' viennarna="${pkgver}") cd "${srcdir}/ViennaRNA-${pkgver}" - cd interfaces/Python3 + cd interfaces/Python make DESTDIR="${pkgdir}" install } |