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# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
pkgbase=viennarna
pkgname=('viennarna' 'python-rna' 'perl-rna')
pkgver=2.7.0
pkgrel=2
pkgdesc="RNA Secondary Structure Prediction and Comparison"
arch=('x86_64' 'i686')
license=('Custom')
url="https://www.tbi.univie.ac.at/RNA"
groups=('viennarna-package')
makedepends=( 'perl'
'python'
'libtool'
'check'
'mpfr'
'gsl'
'lapack'
'lapacke'
'blas'
'gcc-fortran')
source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz)
options=('staticlibs' '!strip')
sha256sums=('32aa599bc4e8982d173fa638def5a96781322ad53b4ff2013e429a9961cad0e7')
prepare() {
cd "${srcdir}/ViennaRNA-${pkgver}"
./configure \
--with-cluster \
--with-kinwalker \
--prefix=/usr \
INSTALLDIRS=vendor
}
build() {
cd "${srcdir}/ViennaRNA-${pkgver}"
make
}
check() {
cd "$srcdir/ViennaRNA-${pkgver}"
export LC_ALL=C
make check
}
package_viennarna() {
depends=('perl'
'mpfr'
'gsl'
'lapack'
'blas')
optdepends=('gri: create 2D plots of secondary structure landscape with RNA2Dfold')
provides=('Kinfold=1.4'
'RNAforester=2.0'
'kinwalker=2.0'
'RNAxplorer=0.9'
"viennarna2=${pkgver}"
"libRNA=${pkgver}")
conflict=('kinwalker')
cd "${srcdir}/ViennaRNA-${pkgver}"
# install executables
cd src/bin/
make DESTDIR="${pkgdir}" install
cd ../Kinfold
make DESTDIR="${pkgdir}" install
cd ../RNAforester
install -Dm755 src/RNAforester "${pkgdir}/usr/bin/"
install -Dm644 man/RNAforester.1* "${pkgdir}/usr/share/man/man1/"
cd ../Utils
make DESTDIR="${pkgdir}" install
cd ../Cluster
make DESTDIR="${pkgdir}" install
cd ../Kinwalker
make DESTDIR="${pkgdir}" install
cd ../RNAlocmin
make DESTDIR="${pkgdir}" install
cd ../RNAxplorer
make DESTDIR="${pkgdir}" install
cd ../..
# install library and header files
cd src/ViennaRNA
make DESTDIR="${pkgdir}" install
cd ../..
# install manpages, documentation, examples, and misc files
cd man
make DESTDIR="${pkgdir}" install
cd ../doc
make DESTDIR="${pkgdir}" install
cd ../examples
make DESTDIR="${pkgdir}" install
cd ../misc
make DESTDIR="${pkgdir}" install
cd ..
# install pkg-config file
install -Dm644 RNAlib2.pc "$pkgdir/usr/lib/pkgconfig/RNAlib2.pc"
install -Dm644 COPYING "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
# cleanup after dirty install ...
install -dm755 "$pkgdir"/usr/bin/vendor_perl
for perlscript in "$pkgdir"/usr/share/ViennaRNA/bin/*.pl ; do
mv "$perlscript" "$pkgdir/usr/bin/vendor_perl/"
done
# no need for that file it is outdated anyway
rm $pkgdir/usr/share/info/dir
}
package_python-rna() {
depends=('python' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
cd interfaces/Python
make DESTDIR="${pkgdir}" install
}
package_perl-rna() {
depends=('perl' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"
cd interfaces/Perl
make DESTDIR="${pkgdir}" install
}
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