.SRCINFO


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pkgbase = r-granie
	pkgdesc = Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data
	pkgver = 1.8.0
	pkgrel = 1
	url = https://bioconductor.org/packages/GRaNIE
	arch = any
	license = Artistic-2.0
	depends = r-annotationhub
	depends = r-biomart
	depends = r-biostrings
	depends = r-checkmate
	depends = r-circlize
	depends = r-colorspace
	depends = r-complexheatmap
	depends = r-data.table
	depends = r-deseq2
	depends = r-dplyr
	depends = r-ensembldb
	depends = r-forcats
	depends = r-futile.logger
	depends = r-genomeinfodb
	depends = r-genomicranges
	depends = r-ggplot2
	depends = r-gridextra
	depends = r-igraph
	depends = r-limma
	depends = r-magrittr
	depends = r-matrixstats
	depends = r-patchwork
	depends = r-progress
	depends = r-rcolorbrewer
	depends = r-readr
	depends = r-reshape2
	depends = r-rlang
	depends = r-s4vectors
	depends = r-scales
	depends = r-stringr
	depends = r-summarizedexperiment
	depends = r-tibble
	depends = r-tidyr
	depends = r-tidyselect
	depends = r-topgo
	depends = r-viridis
	optdepends = r-biocfilecache
	optdepends = r-biocparallel
	optdepends = r-biocstyle
	optdepends = r-bsgenome.dmelanogaster.ucsc.dm6
	optdepends = r-bsgenome.hsapiens.ucsc.hg19
	optdepends = r-bsgenome.hsapiens.ucsc.hg38
	optdepends = r-bsgenome.mmulatta.ucsc.rhemac10
	optdepends = r-bsgenome.mmusculus.ucsc.mm10
	optdepends = r-bsgenome.mmusculus.ucsc.mm9
	optdepends = r-bsgenome.rnorvegicus.ucsc.rn6
	optdepends = r-bsgenome.rnorvegicus.ucsc.rn7
	optdepends = r-chipseeker
	optdepends = r-clusterprofiler
	optdepends = r-csaw
	optdepends = r-dose
	optdepends = r-edaseq
	optdepends = r-ihw
	optdepends = r-jaspar2022
	optdepends = r-jaspar2024
	optdepends = r-knitr
	optdepends = r-ldlinkr
	optdepends = r-motifmatchr
	optdepends = r-org.dm.eg.db
	optdepends = r-org.hs.eg.db
	optdepends = r-org.mm.eg.db
	optdepends = r-org.mmu.eg.db
	optdepends = r-org.rn.eg.db
	optdepends = r-purrr
	optdepends = r-rbioapi
	optdepends = r-reactomepa
	optdepends = r-testthat
	optdepends = r-tfbstools
	optdepends = r-txdb.dmelanogaster.ucsc.dm6.ensgene
	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
	optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
	optdepends = r-txdb.mmulatta.ucsc.rhemac10.refgene
	optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene
	optdepends = r-txdb.mmusculus.ucsc.mm9.knowngene
	optdepends = r-txdb.rnorvegicus.ucsc.rn6.refgene
	optdepends = r-txdb.rnorvegicus.ucsc.rn7.refgene
	optdepends = r-variancepartition
	optdepends = r-wgcna
	source = https://bioconductor.org/packages/release/bioc/src/contrib/GRaNIE_1.8.0.tar.gz
	md5sums = eebd7994ef623c8636b4ea0d6ca91a55
	b2sums = d29cd13677278725a34d8b32daf75f2d65b47b7738bf453c1c643e43b352509d92cb4bf03219ad0519f83dfc0c5f4a8229dfe20cd028afa5ed1679728f683134

pkgname = r-granie