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# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
pkgbase=barriers
pkgname=('barriers' 'perl-rna-barrier')
pkgver=1.8.1
pkgrel=1
pkgdesc="Compute local minima and energy barriers of a landscape"
arch=('x86_64' 'i686')
license=('Custom')
url="https://www.tbi.univie.ac.at/RNA/Barriers"
depends=('perl')
optdepends=('viennarna: Generate sets of suboptimal RNA secondary structures with RNAsubopt'
'treekin: Compute folding dynamics using barriers generated transition rates')
source=(http://www.tbi.univie.ac.at/RNA/packages/source/Barriers-${pkgver}.tar.gz)
sha256sums=('072c1bfdddf70bd638b068e2a651308cddccb5661478502537a55377e625cea0')
build() {
cd "${srcdir}/Barriers-${pkgver}"
./configure --prefix=/usr INSTALLDIRS=vendor || return 1
make || return 1
}
check() {
cd "$srcdir/Barriers-${pkgver}"
export LC_ALL=C
make check
}
package_barriers() {
provides=('genPoHoLandscape'
'crossrates.pl'
'saddle2dot.pl'
'saddle2gml.pl'
'treeplot.pl')
cd "${srcdir}/Barriers-${pkgver}"
# install executables
cd src/
make DESTDIR="${pkgdir}" install || return 1
cd ..
# install manpages, documentation, examples, and misc files
cd man
make DESTDIR="${pkgdir}" install
cd ..
# install generic perl scripts
cd perl/
for perlscript in crossrates.pl saddle2dot.pl saddle2gml.pl treeplot.pl ; do
install -Dm755 "$perlscript" "$pkgdir/usr/bin/"
done
cd ..
}
package_perl-rna-barrier() {
depends=('perl' 'perl-rna')
provides=('fix_bar.pl'
'saddle.pl')
cd "${srcdir}/Barriers-${pkgver}"
cd perl
make DESTDIR="${pkgdir}" install
# remove any perl scripts not belonging to this package
for perlscript in crossrates.pl saddle2dot.pl saddle2gml.pl treeplot.pl ; do
rm "${pkgdir}/usr/bin/${perlscript}"
done
cd ..
}
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