PKGBUILD


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# Maintainer: Michael Schubert <mschu.dev at google mail>
pkgname=biomart
pkgver=0.8
pkgrel=1
pkgdesc="A query-oriented data management system"
arch=('i686' 'x86_64')
url="http://www.biomart.org/"
license=('LGPL')
depends=('java-runtime')
source=('ftp://ftp.ebi.ac.uk/pub/software/biomart/martj_current/martj-bin.tar.gz')
sha256sums=('a506f3632e61ec721494e7c43194ab6e807808cd087b8b82443eb0e8b3dcc1db')

package() {
  mkdir -p "$pkgdir"/opt/biomart
  cp -r "$srcdir"/martj-bin/* "$pkgdir"/opt/biomart/

  mkdir -p "$pkgdir"/usr/bin
  for L in martbuilder marteditor martexplorer martregistrydbtool martrunner martshell; do
      ln -s /opt/biomart/bin/$L.sh "$pkgdir"/usr/bin/$L
  done
}