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# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
pkgname=blasr-git
pkgver=r507.f8bfa9c
pkgrel=1
pkgdesc="The PacBio long read aligner"
arch=('i686' 'x86_64')
url="https://github.com/PacificBiosciences/blasr"
license=('custom')
depends=('hdf5-cpp-fortran')
makedepends=('cmake')
conflicts=('blasr')
provides=('blasr')
source=("git+https://github.com/PacificBiosciences/blasr"
"git+https://github.com/PacificBiosciences/blasr_libcpp"
"git+https://github.com/PacificBiosciences/pbbam")
md5sums=('SKIP' 'SKIP' 'SKIP')
pkgver() {
cd $srcdir/blasr
printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
}
prepare() {
cd $srcdir/blasr
git submodule init
git config submodule.libcpp.url $srcdir/blasr_libcpp
git config submodule.pbbam.url $srcdir/pbbam
git submodule update
mkdir -p build
}
build() {
cd $srcdir/blasr/build
cmake \
-DCMAKE_INSTALL_PREFIX=/usr \
-DCMAKE_BUILD_TYPE=Release \
..
make
}
package() {
cd $srcdir/blasr/build
make DESTDIR=$pkgdir install
install -Dm644 ../LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
}
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