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# Maintainer: bipin Kumar <kbipinkumar@pm.me>
pkgbase=estscan
pkgname=('estscan' 'estscan-doc')
pkgver=3.0.3
pkgrel=2
pkgdesc="ORF-independent detector of coding DNA sequences"
arch=(x86_64)
url="https://estscan.sourceforge.net/"
license=('custom')
makedepends=('gcc-fortran')
source=(
"$pkgbase-$pkgver.tar.gz::"https://sourceforge.net/projects/estscan/files/estscan/${pkgver}/estscan-${pkgver}.tar.gz""
"Manual.pdf::"https://sourceforge.net/projects/estscan/files/documentation/Feb-2007/user_guide_fev_07.pdf""
'Makefile.patch'
)
sha256sums=('037dc8770681ed12406a789ea292462a4ce5d89b0e906a1a3340aa4debc71e2f'
'416998f9fc282a53679fd56585b468ccebc4463e61ee5e989d9b426ed6f725fd'
'262916b33753b64406a926a85d3c8fc807c7acbc4fdcf90955f2bfa6c2dd8a48')
prepare() {
cp *.patch ${pkgbase}-${pkgver}/
cp *.pdf ${pkgbase}-${pkgver}/
cd ${pkgbase}-${pkgver}
patch -p1 < Makefile.patch
}
build() {
cd ${pkgbase}-${pkgver}
make -f Makefile
}
package_estscan() {
depends=('glibc' 'perl' 'gcc-fortran' 'gcc-libs')
cd ${pkgbase}-${pkgver}
for bin in {estscan,evaluate_model,extract_EST,extract_UG_EST,makesmat,maskred,prepare_data,winsegshuffle}
do
install -Dm755 ${bin} "$pkgdir"/usr/bin/${bin}
done
install -Dm644 COPYRIGHT "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
}
package_estscan-doc() {
arch=(any)
pkgdesc="Documentation for estscan"
install -d "$pkgdir"/usr/share/doc/${pkgname}/
cd ${pkgbase}-${pkgver}
install -Dm755 Manual.pdf "$pkgdir"/usr/share/doc/${pkgname}/
install -Dm644 COPYRIGHT "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
}
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