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# Maintainer: bipin Kumar <kbipinkumar@pm.me>
pkgname=hifiasm
pkgver=0.21.0
pkgrel=1
pkgdesc="Haplotype-resolved de novo assembler for PacBio Hifi reads. https://doi.org/10.1038/s41592-020-01056-5"
arch=(x86_64)
url="https://github.com/chhylp123/hifiasm"
license=('MIT')
depends=('glibc' 'gcc-libs' 'zlib')
source=(
"$pkgname-$pkgver.tar.gz::"https://github.com/chhylp123/hifiasm/archive/refs/tags/${pkgver}.tar.gz""
"LDFLAG.patch::"https://patch-diff.githubusercontent.com/raw/chhylp123/hifiasm/pull/484.patch""
)
b2sums=('b8cb67212925d92ed462c37d74669e5b081f0a03a932610452883f65a9e8227f29e97b328563773938ad76623dd9df1bdb0de87ffad77662786e8e8bd3e1eed8'
'6fa4df620ac4f10991702edaf155982ad7730d09caf69774403a1843f0668d00c9bdbe1c9c8ba20c56f7b2b214292da8184ed665a8e0812a0aa0119c20ae70fc')
prepare() {
cd ${pkgname}-${pkgver}
patch -p1 < ${srcdir}/LDFLAG.patch
}
build() {
cd ${pkgname}-${pkgver}
export LDFLAGS="-Wl,-z,relro,-z,now"
make
}
package() {
cd ${pkgname}-${pkgver}
install -Dm755 hifiasm "$pkgdir"/usr/bin/hifiasm
install -Dm644 LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
mkdir -p ${pkgdir}/usr/share/man/man1/
cp hifiasm.1 ${pkgdir}/usr/share/man/man1/hifiasm.1
}
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