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# Contributor: Decrypted Epsilon <decrypted.epsilon@gmail.com>
# Contributor: Stefan Husmann <stefan-husmann@t-online.de>
# Maintainer: Piotr Balwierz <parseByHuman(surname at email_service_of_google)>
# Co-maintainer: Rhinoceros <https://aur.archlinux.org/account/rhinoceros>
pkgname=igv
pkgver=2.19.3
_github_pkgver=$pkgver
minor_pkgver=$(<<<$pkgver sed -E 's/^([0-9]+\.[0-9]+)\..*/\1/')
_pkgver=${pkgver//_/-} # currently not needed
pkgrel=1
pkgdesc="High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute."
arch=('any')
url="http://www.broadinstitute.org/software/igv/home"
license=('MIT')
depends=('jre21-openjdk' 'archlinux-java-run' 'sh')
#"igv-$pkgver.tar.gz::https://github.com/igvteam/igv/archive/v$pkgver.tar.gz"
source=("https://data.broadinstitute.org/igv/projects/downloads/${minor_pkgver}/IGV_Linux_${pkgver}_WithJava.zip"
"$pkgname.sh"
"igv_hidpi.sh"
"$pkgname.desktop"
"igv_hidpi.desktop"
"${pkgname}-license-2023.txt::https://raw.githubusercontent.com/igvteam/igv/v${_github_pkgver}/license.txt"
"https://raw.githubusercontent.com/igvteam/igv/v${_github_pkgver}/docs/web/IGV_64.png")
sha512sums=('388eb9b0faefa6fc437bcfd594682eefc9f0c4dd579621e112a2bafa4e8f053c5f5239ca6cf0439644244b26749b676fcbd2c0146d6afcfcb297f0c5ce9b2fe5'
'b382236f58035cee2ab24eaddcc4ace9d230a6378114b9ef23f84f347586547d5e759709aa9e1a4ed0421c76778af7d88b7637f47cc8cfc7c7bb5dcf9d244986'
'47fad83e195055bebedfedf13d5d9e3a621dc162e41bc4e4c6cfdbfce204abc87f25577ec70c02fc9b4fb0ce785017d826071b32de1a0dcc43d6ef5cb459f4d5'
'668b6dc6621415298af2b1b57c7bc4cca5be5fd45c189d14bc90cb0e5d992b53eda806a058d1920b96451c0f441b8670931fad0382c4568498b9ba6e81f5d263'
'ff9ec7e172ed69ff6a7cb6ebca7baf702fde4f702e59bc8cab6acbeb5e6cdf1884ec1fc53ec3ba0ca4960807f79edc5f0370c2780e3a6325b6faa61326a05533'
'ae986e63acc2d62af17315c3b3abcd54897bf418dd42b7c90a06d0e89550f4eebc887ed63be04f8880fe193f01bb12909306046b34e74905c125b8f0594937d4'
'42a3924c7022fab7ed3598fe5a8524127a7386fb9bf6d71e90f1e85e0087b551797806b0c24679ce8fa24b6a448f55942f934e438bd18623d76711571affa296')
package() {
install -Dm755 $pkgname.sh "$pkgdir"/usr/bin/$pkgname
install -Dm755 "$pkgname"_hidpi.sh "$pkgdir"/usr/bin/"$pkgname"_hidpi
install -Dm644 $pkgname.desktop "$pkgdir"/usr/share/applications/$pkgname.desktop
install -Dm644 "$pkgname"_hidpi.desktop "$pkgdir"/usr/share/applications/"$pkgname"_hidpi.desktop
install -Dm644 ${pkgname}-license-2023.txt "${pkgdir}/usr/share/licenses/${pkgname}/license.txt"
install -Dm644 IGV_64.png "$pkgdir"/usr/share/pixmaps/$pkgname.png
cd IGV_Linux_${_pkgver}
install -Dm644 igv.args "$pkgdir"/usr/share/java/$pkgname/igv.args
install -Dm644 lib/* -t "$pkgdir"/usr/share/java/$pkgname/lib/
}
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