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# Maintainer: Vincent von Schelm <aur at vncnt dot eu>
pkgname=('infrared-git')
pkgName=('Infrared-git')
pkgver=0.4.r0.g2af827c
pkgrel=1
pkgdesc="A generic C++/Python hybrid library for efficient (fixed-parameter tractable) Boltzmann sampling."
arch=('x86_64')
url="https://github.com/s-will/Infrared/"
license=('GPL3')
groups=('viennarna-package')
depends=('htd'
'boost-libs'
'python')
makedepends=('git'
'boost'
'doxygen')
optdepends=('python-networkx: fallback tree decomposition'
'tdlib: alternative to libHTD tree decomposition'
'python-rna: required by redprint.py')
provides=('libinfrared.so' 'libhtdwrap.so' 'redprint.py')
conflicts=('infrared')
source=("Infrared::git+${url}#branch=master")
md5sums=('SKIP')
pkgver() {
cd "${pkgName%-git}"
git describe --long --tags | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g'
}
prepare() {
cd "${pkgName%-git}"
#sed -ie '/PYTHON_VERSION/s/3.6/3.8/g' configure.ac
autoreconf -i
}
build() {
cd "${pkgName%-git}"
./configure --with-htd=/usr --with-boost-python --prefix=/usr
make
make doxygen-doc
}
check() {
cd "${pkgName%-git}"
}
package() {
cd "${pkgName%-git}"
make DESTDIR="$pkgdir" install
# symlink to python site-packages
local site_packages=$(python -c "import site; print(site.getsitepackages()[0])")
mkdir -p "${pkgdir}${site_packages}"
ln -st "${pkgdir}${site_packages}" /usr/lib/libhtdwrap.so /usr/lib/libinfrared.so
for pymodule in \
infrared.py \
rna_support.py \
treedecomp.py \
redprint.py \
redprint_complexity.py
do
mv "${pkgdir}/usr/bin/$pymodule" "${pkgdir}${site_packages}"
done
ln -st "${pkgdir}/usr/bin/" "${site_packages}/redprint.py" "${site_packages}/redprint_complexity.py"
}
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