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# Maintainer: Alonso Rodriguez <alonso.rodriguez (at) udc.es>
pkgname=pato
pkgver=0.0.3
pkgrel=0
pkgdesc="PATO: high PerformAnce TriplexatOr is a high performance tool for the fast and efficient detection of triple helices and triplex features in nucleotide sequences"
arch=('any')
url="https://github.com/UDC-GAC/pato"
license=('MIT')
depends=()
optdepends=()
conflicts=('pato' 'pato-git')
provides=('pato')
source=("${pkgname}-${pkgver}.tar.gz::https://github.com/UDC-GAC/pato/archive/v${pkgver}.tar.gz")
sha256sums=('e95a99ae1be1f19886b60abbd8a1ab4f0ed2474b824bf4e04f12e1072e0c9a42')
prepare() {
cd "$srcdir/$pkgname-$pkgver"
sed -i 's/-march=native//g' makefiles/Makefile.gnu
sed -i "s/\"v${pkgver}\"/\"v${pkgver}-${pkgrel}arch\"/g" src/command_line_parser.hpp
}
build() {
cd "$srcdir/$pkgname-$pkgver"
make gnu BUILD=release $MAKEFLAGS
}
check() {
cd "$srcdir/$pkgname-$pkgver"
make gnu BUILD=serial $MAKEFLAGS
./test/test.bash gnu
}
package() {
cd "$srcdir/$pkgname-$pkgver"
# TODO fix if cross-compiling (please don't do that)
./target/gnu/pato.release --export-help=man | gzip > pato.1.gz
install -Dm644 pato.1.gz "$pkgdir/usr/share/man/man1/pato.1.gz"
./target/gnu/pato.release --export-help=html > pato.html
install -Dm644 pato.html "$pkgdir/usr/share/doc/pato/html/pato.html"
# Install pato.release
install -Dm755 target/gnu/pato.release "$pkgdir/usr/bin/pato"
# Install the license
install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
}
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