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# Maintainer: Dominik Schrempf <dominik dot schrempf at gmail dot com>
pkgname=pbmpi2-git
_gitname=pbmpi2
pkgver=1.7.675fab8
pkgrel=2
pkgdesc="Efficient phylogenomic tree reconstruction using Bayesian statistics; multicore version (MPI)"
arch=(x86_64)
url="http://www.atgc-montpellier.fr/phylobayes/"
license=('GPL2')
depends=('glibc' 'openmpi')
makedepends=('git')
# Does not conflict because executable names differ.
# conflicts=('phylobayes' 'phylobayes-mpi')
source=("${pkgname}::git+https://github.com/bayesiancook/${_gitname}.git")
md5sums=('SKIP')
noextract=()
pkgver() {
cd ${pkgname}
printf "%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
}
build() {
cd $pkgname
mkdir build
cd sources
# XXX: CONSTEXPR required to compile without '-fpermissive'.
make CPPFLAGS="-w -O3 -c -fpermissive"
}
package() {
cd "$srcdir/$pkgname"
# XXX: Not all binaries are installed.
install -D -m755 "data/pb_mpi" "${pkgdir}/usr/bin/pb_mpi"
install -D -m755 "data/readpb_mpi" "${pkgdir}/usr/bin/readpb_mpi"
install -D -m755 "data/tracecomp" "${pkgdir}/usr/bin/tracecomp"
}
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