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# Maintainer: Blair Bonnett <blair dot bonnett at gmail dot com>
pkgname=python-argopy
pkgdesc='Retrieve and analyse data from the Argo network of ocean profilers'
pkgver=0.1.16
pkgrel=1
arch=('any')
url='https://argopy.readthedocs.io/'
license=('EUPL-1.2')
depends=(
'python-aiohttp'
'python-decorator'
'python-erddapy'
'python-fsspec'
'python-netcdf4'
'python-packaging'
'python-scipy'
'python-toolz'
'python-xarray'
'python-requests'
)
makedepends=(
'python-build'
'python-installer'
'python-setuptools'
'python-wheel'
)
checkdepends=(
'python-pytest'
'python-pytest-localftpserver'
)
optdepends=(
'jupyterlab: interactive visualization of available data'
'python-arrow: im-memory big data analytics'
'python-cartopy: plotting of cartographic data'
'python-dask: parallel access'
'python-ipykernel: interactive visualization of available data'
'python-matplotlib: plotting of profile data'
'python-seaborn: visualization of statistical data'
'python-tqdm: progress meters'
)
_pypi=argopy
source=(
"argopy-$pkgver.tar.gz::https://github.com/euroargodev/argopy/archive/refs/tags/v$pkgver.tar.gz"
)
sha256sums=(
'6cca63136113ea6a02d4c1f0ceca4b8669a2baaca1b7bd84881c3920e313ce92'
)
build() {
cd "$_pypi-$pkgver"
python -m build --wheel --no-isolation
}
check() {
cd "$_pypi-$pkgver"
python -m venv --system-site-packages test-env
test-env/bin/python -m installer dist/"argopy-$pkgver"*.whl
cd argopy/tests
# Skip various tests which don't work with the system version of xarray
# (whic has incomplete NumPy 2.0 support). If you have problems in use, I
# would suggest using a virtual environment with xarray < 2024.3 (to avoid
# another bug, see https://github.com/euroargodev/argopy/issues/373) and
# numpy < 2.0.0.
local skip_tests=(
'test_to_xarray'
'test_to_dataframe'
'test_load'
'test_domain'
'test_fetching'
'Test_ArgoNVSReferenceTables'
'test_open_dataset'
'test_open_mfdataset'
'test_open_json'
'test_open_mfjson'
'test_read_csv'
'test_cache_a_file'
'test_clear_cache'
'test_lscache'
)
local skipstr=""
for testname in "${skip_tests[@]}"; do
skipstr="$skipstr and not $testname"
done
skipstr="${skipstr:5}" # Trim the leading ' and '.
# We also skip some files where all tests fail, see above comment.
../../test-env/bin/python -m pytest -c pytest.ini \
--ignore=test_fetchers_data_erddap.py \
--ignore=test_fetchers_data_erddap_bgc.py \
--ignore=test_fetchers_data_gdac.py \
--ignore=test_xarray_engine.py \
-k "$skipstr"
}
package() {
cd "$_pypi-$pkgver"
python -m installer --destdir="$pkgdir" dist/"argopy-$pkgver"*.whl
install -Dm644 -t "$pkgdir/usr/share/licenses/$pkgname" LICENSE
# Remove the tests from the final package.
local site_packages=$(python -c "import site; print(site.getsitepackages()[0])")
rm -r "$pkgdir/$site_packages/argopy/tests"
}
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