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# Maintainer: Clint Valentine <valentine.clint@gmail.com>
_name=PyVCF
pkgbase='python-pyvcf-git'
pkgname=('python-pyvcf-git' 'python2-pyvcf-git')
pkgver=v0.5.0.r266.g476169c
pkgrel=2
pkgdesc="A Variant Call Format reader for Python"
arch=('any')
url=https://pypi.python.org/pypi/"${_name}"
license=('custom:population-genetics-technologies')
makedepends=(
'python' 'python-setuptools' 'cython'
'python2' 'python2-setuptools' 'cython2')
options=(!emptydirs)
source=("${_name}"-"${pkgver}"::git+https://github.com/jamescasbon/"${_name}".git)
sha256sums=('SKIP')
pkgver() {
cd "${srcdir}"/"${_name}"-"${pkgver}"
git describe --long | sed 's/\([^-]*-g\)/r\1/;s/-/./g'
}
prepare() {
cp -a "${_name}"-"${pkgver}"{,-py2}
}
build(){
cd "${srcdir}"/"${_name}"-"${pkgver}"
python setup.py build
cd "${srcdir}"/"${_name}"-"${pkgver}"-py2
python2 setup.py build
}
package_python2-pyvcf-git() {
depends=('python2')
provides=('python2-pyvcf')
conflicts=('python2-pyvcf')
cd "${_name}"-"${pkgver}"-py2
python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build
install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE
mv "${pkgdir}"/usr/bin/vcf_melt "${pkgdir}"/usr/bin/vcf_melt2
for script in "${pkgdir}"/usr/bin/*.py; do
mv "${script}" "${pkgdir}"/usr/bin/$(basename "${script%.py}2.py")
done
}
package_python-pyvcf-git() {
depends=('python')
provides=('python-pyvcf')
conflicts=('python-pyvcf')
cd "${_name}"-"${pkgver}"
python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build
install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE
}
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