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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster.base
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Save Bioconductor Objects to File"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-alabaster.schemas
r-jsonlite
r-jsonvalidate
r-rcpp
r-rhdf5
r-s4vectors
zlib
)
makedepends=(
r-rhdf5lib
r-assorthead
)
_checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-digest
r-knitr
r-rmarkdown
r-testthat
r-alabaster.matrix
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('9a62e4a2f2e7291bf9dd77d14d231ffb')
b2sums=('2dbb32580515b65fefee9242cadea6682e43621f4ca6092f8935d27837fe28e2464704fba3ad8bc0c4fc9b06355a8ba11d38417a96b68691f9c884122b738a45')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
_check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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