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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster.base
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Save Bioconductor Objects to File"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-alabaster.schemas
r-jsonlite
r-jsonvalidate
r-rcpp
r-rhdf5
r-s4vectors
zlib
)
makedepends=(
r-rhdf5lib
r-assorthead
)
_checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-digest
r-knitr
r-rmarkdown
r-testthat
r-alabaster.matrix
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e71ef6abb2fa73aafb03ece1e19cc66d')
b2sums=('8225c41a59a128edccb542b9d01f6a4aaa7766716c3082c1744f39de4e13f5c8128533d9b6ea84a06f2484d0b88c3c6fd83dd342504c7a2d1ef08d376a687ee7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
_check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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