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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster.files
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Wrappers to Save Common File Formats"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-alabaster.base
r-biocgenerics
r-rsamtools
r-s4vectors
)
checkdepends=(
r-testthat
r-variantannotation
)
optdepends=(
r-biocstyle
r-biostrings
r-knitr
r-rmarkdown
r-rtracklayer
r-testthat
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e979232b1276c91f64db8987e2d73172')
b2sums=('ba7dd5d2e95383c807640a02040b33c9c3f4ad50651318cbff050ee48d8f67c05d191adff94aa7579f95f3a6af414176988d581b877f0e445b52cf0f09c0bfc7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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