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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=alabaster.mae
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Load and Save MultiAssayExperiments"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(MIT)
depends=(
  r-alabaster.base
  r-alabaster.se
  r-multiassayexperiment
  r-s4vectors
)
checkdepends=(
  r-biocparallel
  r-testthat
)
optdepends=(
  r-biocparallel
  r-biocstyle
  r-knitr
  r-rmarkdown
  r-summarizedexperiment
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('43abcdda61fc9d69dbc24dbd1c91664d')
sha256sums=('319236c02b188c5e5e9b4b3828bac63f474932c25f4b1c91fbf03f738078e8a9')

build() {
  mkdir -p build
  R CMD INSTALL "$_pkgname" -l build
}

check() {
  cd "$_pkgname/tests"
  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"

  install -d "$pkgdir/usr/share/licenses/$pkgname"
  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}