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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster.matrix
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Load and Save Artifacts from File"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-alabaster.base
r-biocgenerics
r-delayedarray
r-hdf5array
r-rcpp
r-rhdf5
r-s4arrays
r-s4vectors
r-sparsearray
)
checkdepends=(
r-biocsingular
r-chihaya
r-residualmatrix
r-testthat
)
optdepends=(
r-biocsingular
r-biocstyle
r-chihaya
r-knitr
r-residualmatrix
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0121ee8563a09299dcb7681f0655dd4f')
b2sums=('7ec1922f7d26968c1b67697d0902d68542c99ea7ab28bac44ed0d2f46f887a096ffb1df1bf51886babf80083fb8117794fcabd17c0b2032da6bfddb9ef9e8919')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
_check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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