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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=alabaster.ranges
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Load and Save Ranges-related Artifacts from File"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(MIT)
depends=(
  r-alabaster.base
  r-biocgenerics
  r-genomeinfodb
  r-genomicranges
  r-iranges
  r-s4vectors
)
checkdepends=(
  r-testthat
)
optdepends=(
  r-biocstyle
  r-jsonlite
  r-knitr
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('af5d849080999b0167cc39fc182721e9')
sha256sums=('6d14edde9d7563eec0846119f922eb4193c5bcccc9439ce82df9fdac34b1c65c')

build() {
  mkdir -p build
  R CMD INSTALL "$_pkgname" -l build
}

check() {
  cd "$_pkgname/tests"
  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"

  install -d "$pkgdir/usr/share/licenses/$pkgname"
  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}