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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster.sce
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Load and Save SingleCellExperiment from File"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-alabaster.base
r-alabaster.se
r-jsonlite
r-singlecellexperiment
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7b5ab7cf1ca1fb66dd1f490b4fc4dd2c')
b2sums=('9d34d256bd73085f61125a6499a528da02d149e4f16e074c96ba041d507fbaf50cf366819b88a303652ac1b8fd619ca56a77c946b27ead9a1b70fb4e85342be6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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