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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ALPS
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=6
pkgdesc='AnaLysis routines for ePigenomicS data'
arch=('any')
url="https://bioconductor.org/packages/3.14/${_pkgname}"
license=('MIT')
depends=(
r
r-assertthat
r-biocparallel
r-chipseeker
r-corrplot
r-data.table
r-dplyr
r-genefilter
r-genomicranges
r-ggally
r-gghalves
r-ggplot2
r-ggseqlogo
r-gviz
r-magrittr
r-org.hs.eg.db
r-plyr
r-reshape2
r-rtracklayer
r-stringr
r-tibble
r-tidyr
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
)
optdepends=(
r-rmarkdown
r-knitr
r-complexheatmap
r-circlize
r-testthat
)
makedepends=(
git
tar
)
source=("git+https://git.bioconductor.org/packages/${_pkgname}.git")
sha256sums=('SKIP')
build() {
tar -zcvf ${_pkgname}.tar.gz ${_pkgname}
R CMD INSTALL ${_pkgname}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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