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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=AMARETTO
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Apache')
depends=(
r
r-biocfilecache
r-callr
r-circlize
r-complexheatmap
r-curatedtcgadata
r-doparallel
r-dplyr
r-dt
r-foreach
r-ggplot2
r-glmnet
r-gridextra
r-httr
r-impute
r-knitr
r-limma
r-matrixstats
r-multiassayexperiment
r-rcpp
r-readr
r-reshape2
r-rmarkdown
r-tibble
)
optdepends=(
r-biocstyle
r-knitr
r-mass
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('3a9d4f819cd2157e480d46aa397edef2bd513c24f355a8196ca58ba9b4880cc0')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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