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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=animalcules
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive microbiome analysis toolkit"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-ape
r-assertthat
r-caret
r-covr
r-deseq2
r-dplyr
r-dt
r-forcats
r-ggforce
r-ggplot2
r-gunifrac
r-limma
r-magrittr
r-multiassayexperiment
r-plotly
r-rentrez
r-reshape2
r-rocit
r-s4vectors
r-scales
r-shiny
r-shinyjs
r-summarizedexperiment
r-tibble
r-tidyr
r-tsne
r-umap
r-vegan
r-xml
)
optdepends=(
r-biocstyle
r-biomformat
r-devtools
r-glmnet
r-knitr
r-rmarkdown
r-testthat
r-usethis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('05aa4c774cbe54aa5349a8137c39c34f')
b2sums=('f69f9926dda6f0421eb4eeaedfed20cbacc4df7ebe31ea0e684e66e199b10ffde3e6e0c6b59eefd023b9f8460a904c7ea342053d43359d0359948e50ff24151b')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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