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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=animalcules
_pkgver=1.18.3
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive microbiome analysis toolkit"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-ape
r-assertthat
r-caret
r-covr
r-deseq2
r-dplyr
r-dt
r-forcats
r-ggplot2
r-gunifrac
r-limma
r-magrittr
r-multiassayexperiment
r-plotly
r-rentrez
r-reshape2
r-rocit
r-s4vectors
r-scales
r-shiny
r-shinyjs
r-summarizedexperiment
r-tibble
r-tsne
r-umap
r-vegan
r-xml
)
optdepends=(
r-biocstyle
r-biomformat
r-devtools
r-glmnet
r-knitr
r-rmarkdown
r-testthat
r-usethis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('eb0d7e45ea49758bec2b9f248328b1eb')
b2sums=('b25df402dfa315ff24c7d6f03a3288e30da7f21fdaf68da6b543ff440a5caf19346bcbad60b9e6c7c60bdb1284c0e170525653576904fc36c69293d142559d16')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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