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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=AnVIL
_pkgver=1.20.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Bioconductor on the AnVIL compute environment"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocbaseutils
r-dplyr
r-dt
r-futile.logger
r-htmltools
r-httr
r-jsonlite
r-miniui
r-rapiclient
r-rlang
r-shiny
r-tibble
r-tidyr
r-tidyselect
r-yaml
r-anvilbase
)
optdepends=(
r-biocstyle
r-devtools
r-knitr
r-readr
r-rmarkdown
r-testthat
r-withr
r-anvilaz
r-anvilgcp
r-lifecycle
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('27786ce7c5a18ef7b7a2835b8611acd3')
b2sums=('5dbbdc66e0dd1b90f90a1237a0fb8a1e413ad40f32443180ab9b30b336aef5453a75826e2faca225385b9372818640e639d70eba963ae1913bc0e95f4271a04b')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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