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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=APAlyzer
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='A toolkit for APA analysis using RNA-seq data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('LGPL')
depends=(
r
r-deseq2
r-dplyr
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggrepel
r-hybridmtest
r-repmis
r-rsamtools
r-rsubread
r-rtracklayer
r-summarizedexperiment
r-tidyr
r-variantannotation
)
optdepends=(
r-annotationdbi
r-biocstyle
r-knitr
r-org.mm.eg.db
r-pasillabamsubset
r-rmarkdown
r-tbx20bamsubset
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('848b41a3696562dac122db25e69c36b3324ef066c7b5f8f2fe0d954f73d05f80')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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