blob: a5dc32e61bec1e714616a9f655030635537d22a2 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=APL
_pkgver=1.6.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Association Plots"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
r-ggplot2
r-ggrepel
r-magrittr
r-org.hs.eg.db
r-org.mm.eg.db
r-plotly
r-reticulate
r-rlang
r-seurat
r-singlecellexperiment
r-summarizedexperiment
r-topgo
r-viridislite
)
checkdepends=(
python-pytorch
r-testthat
)
optdepends=(
"python-pytorch: faster singular value decomposition"
r-biocstyle
r-knitr
r-rmarkdown
r-scater
r-scran
r-scrnaseq
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e6a2a3a7eb66393dfc3216adbc757dc7')
b2sums=('12d42e136bb087b7aa3b3764fbdc18b8fe32ec749e9be5dcd1df67dc11fe6bebcb6608f0e5a46af3c734b4538a6355bb354e9addb2fbc38b11b18a6399592cb7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|