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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=appreci8R
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=1
pkgdesc='appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('LGPL')
depends=(
r
r-biostrings
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-cosmic.67
r-dt
r-genomicfeatures
r-genomicranges
r-genomicscores
r-homo.sapiens
r-iranges
r-mafdb.1kgenomes.phase3.hs37d5
r-mafdb.exac.r1.0.hs37d5
r-mafdb.gnomadex.r2.1.hs37d5
r-openxlsx
r-polyphen.hsapiens.dbsnp131
r-rentrez
r-rsamtools
r-rsnps
r-s4vectors
r-seqinr
r-shiny
r-shinyjs
r-sift.hsapiens.dbsnp137
r-snplocs.hsapiens.dbsnp144.grch37
r-stringr
r-summarizedexperiment
r-txdb.hsapiens.ucsc.hg19.knowngene
r-variantannotation
r-xtrasnplocs.hsapiens.dbsnp144.grch37
)
optdepends=(
r-go.db
r-org.hs.eg.db
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('19cab34b8f5d11f28d8d904c13a0d02f0bc8c3d5a0f22641f394415a0e398bdb')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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