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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ATACseqQC
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=1
pkgdesc='ATAC-seq Quality Control'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biostrings
r-bsgenome
r-chippeakanno
r-edger
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-genomicscores
r-iranges
r-limma
r-motifstack
r-preseqr
r-randomforest
r-rsamtools
r-rtracklayer
r-s4vectors
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-knitr
r-motifdb
r-phastcons100way.ucsc.hg19
r-rmarkdown
r-testthat
r-trackviewer
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('428466a20404dd5563eb37ecc527533e74c63cf170c067d52ed05bece1cca3ac')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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