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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=atena
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Analysis of Transposable Elements"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biocgenerics
r-biocparallel
r-cli
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-iranges
r-matrixgenerics
r-matrixstats
r-rsamtools
r-s4vectors
r-sparsematrixstats
r-squarem
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-rcolorbrewer
r-rmarkdown
r-runit
r-txdb.dmelanogaster.ucsc.dm6.ensgene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6df35452c39403adb449a974ef1d8d4d')
b2sums=('36eb79f1032d1bb134d6c5238322eea9e69d85c561072dbfe2c4dcd873e3cf3a7d2c483136d6a068250086d37379bc78239f8c150fc2e54b5dcd3bca5a014650')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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