PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=BAGS
_pkgver=2.44.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A Bayesian Approach for Geneset Selection"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r-biobase
  r-breastcancervdx
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bc0aa5cb8950698ae326edb52b36ff95')
b2sums=('6e64d799a43b0e378e0192e7fa56d5806ca48d257a912755bf23a1325dba60e25c2e7b91f463e7a727dd800525c0b1e419e6a10a12d09abd6142676507f23263')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}