PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=BBCAnalyzer
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=1
pkgdesc='BBCAnalyzer: an R/Bioconductor package for visualizing base counts'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('LGPL')
depends=(
  r
  r-biostrings
  r-genomicranges
  r-iranges
  r-rsamtools
  r-summarizedexperiment
  r-variantannotation
)
optdepends=(
  r-bsgenome.hsapiens.ucsc.hg19
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('36a3c222ec72151500407c0f558149a2d88003edbeab36db39a2b8d2a333f59b')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: