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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=beachmat.hdf5
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="beachmat bindings for HDF5-backed matrices"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-beachmat
r-delayedarray
r-hdf5array
r-rcpp
zlib
)
makedepends=(
r-rhdf5lib
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rhdf5
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('54b709d85197696ae959603ea5d730ea')
b2sums=('7d4715ea544ed0db6e74dcdd35e6393d5e0c150017038c08a6cae779c81af7c1023c70accbe599c309a5e376b3bad96a67b1df575ea221b445ed37bd471bd745')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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