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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=beer
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Bayesian Enrichment Estimation in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
jags
r-biocparallel
r-cli
r-edger
r-phipdata
r-progressr
r-rjags
r-summarizedexperiment
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-dplyr
r-ggplot2
r-knitr
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('98e3637a2b57f8b3f426b7609c24cd6a')
b2sums=('a9e268e204d496a12bb06e6d54be2fa866de203191ae067ef1c5e16333d1931d37562d3a686d6fd15d0c378140a1b6673690c2d5d4a633fcb3fd9672f09ff224')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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