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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=bioCancer
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive Multi-Omics Cancers Data Visualization and Analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('AGPL-3.0-only AND CC-BY-NC-SA-4.0')
depends=(
r-algdesign
r-annotationdbi
r-biobase
r-cbioportaldata
r-clusterprofiler
r-diagrammer
r-dose
r-dplyr
r-dt
r-genetclassifier
r-go.db
r-htmlwidgets
r-import
r-org.bt.eg.db
r-org.hs.eg.db
r-plyr
r-r.methodss3
r-r.oo
r-radiant.data
r-reactome.db
r-reactomepa
r-shiny
r-shinythemes
r-tibble
r-tidyr
r-visnetwork
r-xml
)
optdepends=(
r-biocstyle
r-knitr
r-prettydoc
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2b99f3a77d12327a1ff0656d2e029067')
b2sums=('f5695b57e6537ca0003880f00a4be08a805667568c99fd053ca204fc27e787108a85aa8cd84be25887c531a6e701647ac67cf3c3bc4f2e0b7b2d2055a770e8f0')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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