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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BiocOncoTK
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=1
pkgdesc='Bioconductor components for general cancer genomics'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-bigrquery
r-car
r-complexheatmap
r-curatedtcgadata
r-dbi
r-dplyr
r-dt
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggpubr
r-graph
r-httr
r-iranges
r-magrittr
r-plyr
r-rgraphviz
r-rjson
r-s4vectors
r-scales
r-shiny
r-summarizedexperiment
)
optdepends=(
r-annotationdbi
r-annotationhub
r-biobase
r-biocfilecache
r-biocstyle
r-dbplyr
r-ensdb.hsapiens.v75
r-fdb.infiniummethylation.hg19
r-genomeinfodb
r-knitr
r-multiassayexperiment
r-ontologyplot
r-ontoproc
r-org.hs.eg.db
r-pogos
r-reshape2
r-restfulse
r-rhdf5client
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg18.knowngene
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a3ae5bb9a251ee9122de9a14fb770e206f5d8e73470724db3cddaf9ae9c98c40')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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