blob: 5b2c52470a6677c7ce799643dbe81a9ca293cbe6 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BiocSingular
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Singular Value Decomposition for Bioconductor Packages"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-beachmat
r-biocgenerics
r-biocparallel
r-delayedarray
r-irlba
r-rcpp
r-rsvd
r-s4vectors
r-scaledmatrix
)
makedepends=(
r-assorthead
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-residualmatrix
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bb704ac1d36b56a1b8ea141ffad65ab6')
b2sums=('a30a62e3e89de60baceafeb6f2dae274951d5d0ba6ca9d1db10f9b8538ae39108535b768f89ea5758a7c1fc495326a5ff81f5eedfd81a6a4fd54cb42e97987f1')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|