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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=biodb
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=4
pkgdesc="a library and a development framework for connecting to chemical and biological databases"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(AGPL3)
depends=(
r-biocfilecache
r-chk
r-git2r
r-jsonlite
r-lgr
r-lifecycle
r-openssl
r-plyr
r-progress
r-r6
r-rappdirs
r-rcpp
r-rcurl
r-rsqlite
r-stringr
r-withr
r-xml
r-yaml
)
makedepends=(
r-testthat
)
checkdepends=(
r-xml2
)
optdepends=(
r-biocstyle
r-covr
r-devtools
r-knitr
r-rmarkdown
r-roxygen2
r-testthat
r-xml2
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0716a73291fb80cc3d1f0909549cbaa8')
b2sums=('b6bb4839da90b3530a4a6aa5a798374fd20747d32619d69c798aac1508490c6af0d178ddf8c314264d06444ee0582a88d6babc254b88f7bfef1cd8bb94be6d99')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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