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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=biodbExpasy
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="a library for connecting to Expasy ENZYME database"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('AGPL-3.0-only')
depends=(
r-biodb
r-chk
r-r6
r-stringr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-devtools
r-knitr
r-lgr
r-rmarkdown
r-roxygen2
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('92f75401c71d864d1dc6e3311fe08ec1')
b2sums=('6df31d697fe94759bd59a52c2f0f7d8298d534d80b1b869bf9af2f69c3cbfc8584030fd9cd9fe5c5ef356313a1ff78c450b9c9fe2716d02b07dc19379a3f0d81')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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