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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=biodbExpasy
_pkgver=1.8.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="a library for connecting to Expasy ENZYME database"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('AGPL-3.0-only')
depends=(
  r-biodb
  r-chk
  r-r6
  r-stringr
)
checkdepends=(
  r-testthat
)
optdepends=(
  r-biocstyle
  r-covr
  r-devtools
  r-knitr
  r-lgr
  r-rmarkdown
  r-roxygen2
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('320eace31880fe2731992af943a7768e')
b2sums=('10ec1330aa75bef6fffdb22d8ff5aa98dd656079afacb18ba2d68f7388368a74af446adbf946c51cb53fe2f8ecc75626f9c25cb24292894ebbb6f1906276190c')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

check() {
  cd "$_pkgname/tests"
  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}