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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BioNERO
_pkgver=1.10.3
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Biological Network Reconstruction Omnibus"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-complexheatmap
r-dynamictreecut
r-genie3
r-ggdendro
r-ggnetwork
r-ggplot2
r-ggrepel
r-igraph
r-intergraph
r-matrixstats
r-minet
r-netrep
r-patchwork
r-rcolorbrewer
r-reshape2
r-rlang
r-summarizedexperiment
r-sva
r-wgcna
)
checkdepends=(
r-networkd3
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-deseq2
r-knitr
r-networkd3
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('207ef35f0131c41c1596683af729ed04')
b2sums=('1be08477cdc92ce458455a2fea47bfab5ae1a0b1f72633c7f4080d576dd66f9c1caec1f136513357dfc6e7f3715aae2a2fa9489a4c5e7ed28b83ecb73b59ec5f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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